-----Messaggio
originale-----
Da: anonymous NFS user [mailto:nobody@genes.mit.edu]
Inviato: marted́ 18 marzo
2003 12:53
A:
iacono@mailserver.unimi.it
Oggetto: GenomeScan output for sequence 06:52:32
GenomeScan 1.0 Date run:
18-Mar-2003 Time: 06:52:46
Sequence seq : 80508 bp : 42.66% C+G : Isochore 1 ( 0 - 43 C+G%)
Options: GenoaOnly BothStrands
Parameter matrix: HumanIso.smat
Predicted genes/exons:
Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------
1.15 PlyA - 15
10 6 1.05
1.14 Term - 1050
907 144 0
0 59 33
214 0.000 57.25
1.13 Intr - 1374
1240 135 0
0 98 110
37 0.000 28.42
1.12 Intr - 1646
1515 132 2
0 20 111
195 0.000 36.52
1.11 Intr - 4030
3832 199 0 1 118
7 29 0.000 17.75
1.10 Intr - 7367
7191 177 1
0 130 64
110 0.000 31.07
1.09 Intr - 8185 8101
85 2 1
70 101 76 0.000
29.46
1.08 Intr - 16201
16084 118 1
1 69 115
110 0.000 29.81
1.07 Intr - 16672
16545 128 2
2 39 68
89 0.000 23.75
1.06 Intr - 16808
16781 28 2
1 113 80
37 0.000 2.17
1.05 Intr - 20682
20529 154 2
1 82 75
78 0.000 28.11
1.04 Intr - 25316
25159 158 2
2 90 61
142 0.000 30.96
1.03 Intr - 25728
25626 103 2
1 63 78
99 0.000 26.46
1.02 Intr - 28455
28343 113 0
2 87 90
74 0.000 26.16
1.01 Init - 35114
34908 207 2
0 64 68
261 0.000 59.98
1.00 Prom - 37693
37654 40 -4.75
Genoa hits used in predictions: 21 nonredundant hits
Hit2.1_Hit3.1.i Noname|GENSCAN_predicted_peptide_1|626_aa- 424
425
7160 4059 4 BLASTX 1e-36
Hit6.1_Hit7.1.i Noname|GENSCAN_predicted_peptide_1|626_aa- 580
579
1207 1083 3 BLASTX 2e-27
Hit8.1_Hit2.1.i Noname|GENSCAN_predicted_peptide_1|626_aa- 490
491
3802 1676 3 BLASTX 5e-27
Hit10.1_Hit1.1.i Noname|GENSCAN_predicted_peptide_1|626_aa- 70
73
34875 28476 5 BLASTX 6e-21
Hit11.1_Hit10.1.i Noname|GENSCAN_predicted_peptide_1|626_aa- 107
108
28312 25757 3 BLASTX 2.06e-19
Hit9.1_Hit12.1.i Noname|GENSCAN_predicted_peptide_1|626_aa- 297 298
16515 16231 5 BLASTX 5e-16
Hit3.1_Hit13.1.i Noname|GENSCAN_predicted_peptide_1|626_aa- 365
366
8070 7396 5 BLASTX 5e-14
Hit13.1_Hit9.1.i Noname|GENSCAN_predicted_peptide_1|626_aa- 337
337
16052 8216 4 BLASTX 5e-14
Hit1.1 Noname|GENSCAN_predicted_peptide_1|626_aa- 1
70 35114
34905 5 BLASTX 4e-45
Hit2.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 425
490 4029
3832 3 BLASTX 2e-41
Hit3.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 366
424 7366
7190 4 BLASTX 1e-36
Hit4.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 142
193 25316
25161 5 BLASTX 2e-35
Hit5.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 184
245 20714
20529 5 BLASTX 8e-32
Hit6.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 579
626 1053
910 3 BLASTX 1e-27
Hit7.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 517
580 1428
1237 3 BLASTX 1e-27
Hit8.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 491
535 1646
1512 5 BLASTX 5e-27
Hit9.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 298
337 16201
16082 4 BLASTX 2e-24
Hit10.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 73
107 28446
28342 3 BLASTX 6e-21
Hit11.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 108
152 25727
25593 5 BLASTX 2e-19
Hit12.1 Noname|GENSCAN_predicted_peptide_1|626_aa- 269
297 16631
16545 5 BLASTX 5e-16
Hit13.1
Noname|GENSCAN_predicted_peptide_1|626_aa- 337
365 8186
8100 5 BLASTX 5e-14
Predicted peptide sequence(s):
>seq|GenomeScan_predicted_peptide_1|626_aa:Noname|GENSCAN_predicted_pept
>seq|ide_1|626_aa-:1..70:E=4e-45
MEHIQGAWKTISNGFGFKDAVFDGSSCISPTIVQQFGYQRRASDDGKLTDPSKTSNTIRV
FLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAAS
LIGEELQVDFLDHVPLTTHNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKV
PTMCVDWSNIRQLFSQHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTTLPVD
SRMIEDAIRSHSESASPSALSSSPNNLSPTGWSQPKTPVPAQRERAPVSGTQEKNKIRPR
GQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNE
VAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTA
QGMDYLHAKNIIHRDMKSNSILWLLSSFDCSVLNLGKQKGGFLSQVALGARGYLFKERGR
GQENRKVRKLAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVG
RGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASE
PSLHRAAHTEDINACTLTTSPRLPVF