-----Messaggio
originale-----
Da: anonymous NFS user [mailto:nobody@genes.mit.edu]
Inviato: marted́ 18 marzo
2003 12:51
A:
iacono@mailserver.unimi.it
Oggetto: GenomeScan output
for sequence cox4
GenomeScan 1.0 Date run: 18-Mar-2003 Time: 06:50:46
Sequence
hg12_refGene_NM_001861 : 8413 bp : 50.99% C+G : Isochore 2 (43
- 51 C+G%)
Options: GenoaOnly BothStrands
Parameter matrix:
HumanIso.smat
Predicted genes/exons:
Gn.Ex Type S .Begin ...End
.Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------
---- -- -- ---- ---- ----- ----- ------
1.00 Prom -
1999 1960 40 -8.66
2.00 Prom +
2414 2453 40 -6.56
2.01 Init +
2617 2689 73
0 1 38
115 1 0.000 36.64
2.02 Intr +
6348 6515 168 1 0
46 15 181 0.000
24.71
2.03 Intr +
7144 7275 132 2 0
98 101 108 0.000
32.55
2.04 Term + 8149
8285 137 2
2 47 54
181 0.000 48.85
2.05 PlyA + 8390
8395 6 1.05
Genoa hits used in predictions: 7 nonredundant hits
Hit1.1_Hit3.1.i Noname|GENSCAN_predicted_peptide_2|169_aa- 80
81
6544 7113 2 BLASTX 3e-28
Hit3.1_Hit2.1.i Noname|GENSCAN_predicted_peptide_2|169_aa- 124
125
7304 8118 2 BLASTX 3.02e-28
Hit4.1_Hit1.1.i Noname|GENSCAN_predicted_peptide_2|169_aa- 24
25
2718 6317 1 BLASTX 6e-12
Hit1.1
Noname|GENSCAN_predicted_peptide_2|169_aa- 25
80 6347
6514 1 BLASTX 4e-35
Hit2.1
Noname|GENSCAN_predicted_peptide_2|169_aa- 125
169 8148
8282 2 BLASTX 2e-30
Hit3.1
Noname|GENSCAN_predicted_peptide_2|169_aa- 81
124 7143
7274 2 BLASTX 3e-28
Hit4.1
Noname|GENSCAN_predicted_peptide_2|169_aa- 1
24 2617
2688 0 BLASTX 6e-12
Predicted peptide sequence(s):
>hg12_refGene_NM_001861|GenomeScan_predicted_peptide_2|169_aa:Noname|GEN
>SCAN_predicted_peptide_2|169_aa-:25..80:E=4e-35
MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
ALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMW
QKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWKK